Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs72797767 chr16:71606716 A/C 1.08E-5 174 25 30.93 14.5 KM Plot
PCPG rs72797770 chr16:71609054 C/T 1.09E-5 174 24.85 30.93 14.5 KM Plot
PCPG rs72797773 chr16:71609457 C/G 1.0E-5 175 24.7 30.93 14.5 KM Plot
PCPG rs72797783 chr16:71615370 A/G 9.47E-6 176 24.47 30.93 14.5 KM Plot
PCPG rs72797794 chr16:71625620 G/A 1.09E-5 174 25 30.93 14.5 KM Plot
PCPG rs72799868 chr16:71688544 C/T 1.07E-5 173 24.85 34.47 14.5 KM Plot
PCPG rs72799894 chr16:71707388 G/A 8.79E-6 175 24.23 31.48 14.5 KM Plot
PCPG rs72801717 chr16:71737164 T/C 9.25E-6 175 23.83 32.03 14.5 KM Plot
PCPG rs72801722 chr16:71745709 G/A 9.75E-6 175 24.47 32.03 14.5 KM Plot
PCPG rs72801729 chr16:71759672 A/G 8.74E-6 176 24.23 30.93 14.5 KM Plot
PCPG rs72809466 chr16:88676975 C/T 0.000342 176 25.53 24.35 14.47 KM Plot
PCPG rs72811447 chr2:61426155 A/G 7.06E-5 177 21.95 30.63 10.3 KM Plot
PCPG rs72811450 chr2:61427030 G/C 6.7E-5 177 23.77 31.48 10.3 KM Plot
PCPG rs72811458 chr2:61440552 G/A 7.05E-5 176 24.1 31.48 10.3 KM Plot
PCPG rs72811463 chr2:61467894 A/G 6.95E-5 177 23.43 30.93 10.3 KM Plot